Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015788138.1_cds_XP_016448450.1_402
CDS Infomation

[gene=LOC107773326] [db_xref=GeneID:107773326] [protein=E3 ubiquitin-protein ligase COP1-like isoform X3] [protein_id=XP_016448450.1] [location=join(69823..69930,70481..70837,70921..71078,71175..71240,71485..71563,71897..72052,72145..72243,72702..72806,72940..73119,73390..73500,73603..73773)] [gbkey=CDS]
Sequence

ATGGAAAAGAAAAGAAAAATGGAACAAGAAGAAGCTGAAACAAATCTTCAGATTCTGCTT
GAGTTTCTCCAGTGTTTAAGGAAGCAAAAAGTTGAAGAGTTTAATGAGATCCAAAATGAT
CTCAAGTACATTAAAGAAGACATAAATGCTGTGGAGAAGCGTAGAATAGAGTTATATAGG
GCAAGGAGTAGATATTCAGCGAAAATGAGAAAGCTAGTAGATGATTCTTCTGCAATGACA
GTCAGGCCTTCACTGGGAGATAAGGAAGGTGGTGCAATTGTTTCTAGTTCTGTCGATTCA
CAAGAACAAGGTCGTGCTGGTACTGCACAGACCAGGAACACTGATGCAAGAGCTCCTGGG
AATTCTCAAGTTGTTCAATGGAAGGATGACCACGGCGGACCAGATTCACAGCGTCCTAAT
CAACCTGGACAGGCAATAGCAAGGAAAAAACGCATTCATGCACAGTTCAATGAGCTTCAA
ACCTGTTACCTGCAAAAGAGGCGCTATTGGGCAAGACAGTCCGAGAAACAGGAAGAAAGG
GTAGCAAATGTCATGAATAGAGAAGGTTATTCCGCGGGACTTGAAGATTTTCAATCTGTT
CTGTCTACCTATACGCGATACAGTCGTTTGAGGGTTGTTGCTGAACTTAGACATTCTGAC
CTTTTCCACATGGCTAATATCGTTTCAAGTATTGAATTTGACCGAGATGATGAATTGTTT
GCTACTGCTGGGGTATCACGAAGAATTAAGGTCTTCGAATTTGCGTCCGTGGTAAACGAA
CCAGCAGAAGCGCAATGTCCTCTTGTTGAAATGTCTACACGGTCCAAACTAAGTTGTTTG
AGCTGGAACAAGTGCACTAAAAATCACTTAGCAAGCAGTGACTATGAGGGCATAGTGACG
GTTTGGGATGTTACAACTCGTCAGAGTGTGATGGAGTATGAGGAGCATGAAAAACGAGCA
TGGAGTGTTGACTTTTGCCGTACTGAACCTTCTGTGCTTGTGTCTGGTAGTGATGATTGC
AAGGTCAAAGTTTGGTGCACGAAGCAGGAAGCCAGCGTTCTTACCATTGACATGAAAGCT
AACGCTTGCTCTGTGAAGTATAATCCTGGATCCAGTGTTCTTGTAGCTGTGGGTTCGGCG
GATCATCACATCCACTATTATGACTTGCGAAATGTTAGCCAGCCACTGCATATTTTCAGT
GGGCACCGTAAAGCTGTTTCTTATGTAAAGTTTTTATCCAACAATGAGCTAGCTTCTGCA
TCAACAGATAGTACATTGCGTTTGTGGGATGTCAAGGAGAATGTTCCACTGCGTACTTTT
AAAGGACATGCAAATGAGAAGAACTTTGTGGGTCTTACAGTAAACAGTGAATACCTTGCA
TGTGGCAGTGAGACAAATGAAGTGTTTGTCTATCACAAGGAAATTTCTAAGCCAGCAGCT
TGGCACAAATTTGGTTCTGATGATCAGAATGATCCAGATGGGGAAATGGGATCATATTTC
ATCAGTGCTGTTTGTTGGAAACGTGACAGCTCAACAATTCTAACGGCGAACAGTCAAGGG
ACAATAAAAGTGCTTGTCCTTGCTGCTTGA

Peptide Sequence

PEP ID

XP_016448450.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase COP1-like isoform X3 [Nicotiana tabacum]
Sequence

MEKKRKMEQEEAETNLQILLEFLQCLRKQKVEEFNEIQNDLKYIKEDINAVEKRRIELYR
ARSRYSAKMRKLVDDSSAMTVRPSLGDKEGGAIVSSSVDSQEQGRAGTAQTRNTDARAPG
NSQVVQWKDDHGGPDSQRPNQPGQAIARKKRIHAQFNELQTCYLQKRRYWARQSEKQEER
VANVMNREGYSAGLEDFQSVLSTYTRYSRLRVVAELRHSDLFHMANIVSSIEFDRDDELF
ATAGVSRRIKVFEFASVVNEPAEAQCPLVEMSTRSKLSCLSWNKCTKNHLASSDYEGIVT
VWDVTTRQSVMEYEEHEKRAWSVDFCRTEPSVLVSGSDDCKVKVWCTKQEASVLTIDMKA
NACSVKYNPGSSVLVAVGSADHHIHYYDLRNVSQPLHIFSGHRKAVSYVKFLSNNELASA
STDSTLRLWDVKENVPLRTFKGHANEKNFVGLTVNSEYLACGSETNEVFVYHKEISKPAA
WHKFGSDDQNDPDGEMGSYFISAVCWKRDSSTILTANSQGTIKVLVLAA

Transcript Sequence

Gene sequence data has not been registered.